The best time clock app For Paychex

Capture time accurately and streamline your payroll processing with our automated GPS time clock app designed to work seamlessly with Paychex Flex Pro & Paychex Flex Essentials.

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Trusted by 50,000+ workers

At a glance

All-in-one time tracking, scheduling, and job tracking for Paychex.

Accurate GPS time clock

Accurate time tracking made easy for workers.

Automate Payroll

Digitize time capture and payroll. Eliminate tedious admin and mistakes.

Capture job costs

Accurately capture exact labor costs for each job.

Mobile Scheduling

Schedule & organize jobs with a shared digital calendar.

Why use Workyard with Paychex?

Accurate GPS time clock for Paychex

Our Paychex time clock captures accurate timesheets using the industry's most precise GPS – saving you on payroll costs and providing the data you need to run more profitable projects. To make auditing your time and attendance even easier, our app uses smart alerts to surface potential timesheet mistakes.

Automatically capture job costs

Make tagging time to projects and cost codes easy for your crew. Optionally, you can require employees who clock in to assign time to projects to ensure all time is allocated correctly.

Mobile scheduling for Paychex

Make it easy for employees to always know exactly where they need to be. Schedule & organize jobs with a shared digital calendar. Communicate exactly what needs to be done with checklists, photos and more. Easily set up recurring tasks with our Paychex time clock.
"I like that I can instantly run a report in Workyard to show me how we’re doing across any of the five projects we’ve got running at the same time."
Kristi Miller
Owner, Eric Miller Electric

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Automate payroll with Paychex

Digitize time capture and payroll. Eliminate hours of tedious admin and mistakes with a simple time built for Paychex. Reduce payroll processing time by up to 75% each week. At the click of button we'll export timesheets that are ready to be uploaded to Paychex.

Improve billing & job costing accuracy

Import accurate timesheets to Paychex for improved billing and job costing accuracy.

How it works

Step by step guide


Create account

Signup for a free trial


Invite users

Add team members to your Workyard account so they can track time and fill timesheets.


Clock time

Your employees will be invited to download the app. Get your team clocking in and out every day to record time accurately.


Export time to Paychex

Go to the Time Cards page, click Export. Next select the Pay Period you would like to export. All time cards broken down by job and service item can be uploaded to Paychex Flex Essentials and Paychex Flex Pro to avoid the need for manual entry.



Connect Workyard to Paychex today


All your


questions answered.

Can I also integrate your Paychex time clock with my accounting system?

Yes, you can send time to both Paychex for payroll and your accounting system for client billing or job costing requirements. We support leading accounting systems such as QuickBooks Online, QuickBooks Desktop, Sage, Foundation Software, and many more time tracking integrations.

Does Paychex have a time clock app?

Paychex does have its own time clock app which has a great set of capabilities focused on supporting wide range of industries industries including retail, healthcare, restaurants, professional services and many more. Workyard is a time clock app solely focused on contractors, construction, and field services companies. This sole focus allows us to deliver key differentiating features such as ease of use for workers, precise GPS tracking, built-in job cost tracking and scheduling designed to improve communication with your crew.

How do I setup the Paychex time clock integration?

To setup access to our Paychex file generator, you'll need to contact our customer support team. Usually within 24hrs we'll give to access to a portal you can use to generate the Paychex payroll file.

How does Workyard's time clock for Paychex help ensure compliance with labor laws and regulations?

Workyard has many built-in features to help you ensure compliance with labor laws. First, it helps you ensure you meet the FLSA record keeping requirements by capturing every shift that is worked accurately. In addition, it has built-in overtime calculations and rest breaks to help you comply with federal and state labor laws. Finally, its precise GPS audit trail gives you peace of mind that you know the whereabouts of every employee for every minute worked, this can be invaluable when dealing with disputes.

How does your Paychex time clock handle multiple locations and remote employees?

Workyard is specific designed for remote employees working in the field. With Workyard you can setup projects with defined geo-fences. As employees step into these geo-fence boundaries they will be reminded to clock-in. In addition, time can also be easily attributed to specific projects so that you can track your labor costs by project.

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